Commit 8a04d3fd authored by Joscha Schmiedt's avatar Joscha Schmiedt
Browse files

Added placeholders for metadata and removed subfolders for data sources

Data sources (chem lab, bio lab, ...) should go into the metadata.
parent 68a40567
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This repository contains a proposal for a standardized layout of filesystem folders containing all research data associated with a research project at ZMT. It is based on [1] and [2] and currently (2021) under development.
├── 2021_project1
│   ├── 01_project_management
│   │   ├── 01_administration_files
│   │   ├── 02_accepted_grants
│   │   ├── 03_meeting_notes
│   │   ├── 04_related_literature
│   │   ├── 05_data_management_plans
│   │   └── 06_notes
│   ├── 02_materials_and_methods
│   │   ├── 01_protocols
│   │   ├── 02_code
│   │   └── README_MaterialsMethods.md
│   ├── 03_raw_data
│   │   ├── 001_dataset1
│   │   │   ├── LICENSE
│   │   │   ├── bio_lab
│   │   │   ├── chem_lab
│   │   │   ├── data_lab
│   │   │   ├── field_data
│   │   │   ├── geo_lab
│   │   │   ├── online_survey_data
│   │   │   ├── samples
│   │   │   └── simulations
│   │   └── README_RawData.md
│   ├── 04_processed_data
│   │   ├── 001_dataset1_processed
│   │   │   ├── LICENSE
│   │   │   ├── bio_lab
│   │   │   ├── chem_lab
│   │   │   ├── data_lab
│   │   │   ├── field_data
│   │   │   ├── geo_lab
│   │   │   ├── online_survey_data
│   │   │   ├── samples
│   │   │   └── simulations
│   │   └── README_ProcessedData.md
│   ├── 05_data_analysis
│   │   ├── 001_dataset1_analysis
│   │   ├── 990_code_libraries
│   │   ├── LICENSE
│   │   └── README_DataAnalysis.md
│   ├── 06_figures
│   │   ├── 001_dataset1_figures
│   │   ├── 990_shared_figures
│   │   └── README_Figures.md
│   ├── 07_publications
│   │   ├── 01_conferences
│   │   ├── 02_manuscript
│   │   ├── 03_other
│   │   └── README_Publications.md
│   └── 08_misc
└── README.md
```sh
├── 2021_project1
│ ├── 01_project_management
│ │ ├── 01_administration_files
│ │ ├── 02_accepted_grants
│ │ ├── 03_meeting_notes
│ │ ├── 04_related_literature
│ │ ├── 05_data_management_plans
│ │ └── 06_notes
│ ├── 02_materials_and_methods
│ │ ├── 01_protocols
│ │ │ └── 001_protocol1
│ │ │ └── method.yaml
│ │ ├── 02_code
│ │ │ └── code.yml
│ │ └── README_MaterialsMethods.md
│ ├── 03_raw_data
│ │ ├── 001_dataset1
│ │ │ ├── LICENSE
│ │ │ └── dataset.yml
│ │ └── README_RawData.md
│ ├── 04_processed_data
│ │ ├── 001_processed_data
│ │ │ ├── LICENSE
│ │ │ └── dataset.yml
│ │ └── README_ProcessedData.md
│ ├── 05_data_analysis
│ │ ├── 001_dataset1_analysis
│ │ ├── 990_code_libraries
│ │ ├── LICENSE
│ │ └── README_DataAnalysis.md
│ ├── 06_figures
│ │ ├── 001_dataset1_figures
│ │ ├── 990_shared_figures
│ │ └── README_Figures.md
│ ├── 07_publications
│ │ ├── 01_conferences
│ │ ├── 02_manuscripts
│ │ ├── 03_other
│ │ └── README_Publications.md
│ ├── 08_misc
│ └── project.yml
└── README.md
```
When the folder structure was evaluated, a template for automatic folder generation via the [Python Cookiecutter](https://cookiecutter.readthedocs.io) will be provided.
## References
[1] Spreckelsen, F.; Rüchardt, B.; Lebert, J.; Luther, S.; Parlitz, U.; Schlemmer, A. Guidelines for a Standardized Filesystem Layout for Scientific Data. Data 2020, 5, 43. <https://doi.org/10.3390/data5020043>
[2] Colomb, J.; Thorsten, A.; Sehara, K., and The Gin-Tonic team. Towards a Standardized Research Folder Structure. Generation Research, 2021. <https://doi.org/10.25815/WCY6-M233>.
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